Site occupancy and cavity use by the northern flying squirrel in the boreal forest

Tree cavities are used as shelter and breeding nests by numerous avian and mammalian species. In cold environments, tree cavities are often proposed as the best winter nest choice because of the superior protection they offer from precipitation, wind, cold temperatures, and predators. As such, they represent a critical resource, which has the potential to limit population size of non-excavating species. We assessed factors affecting site occupancy in the boreal forest by northern flying squirrels, a secondary user of tree cavities, and to identify which nest type is preferred during the colder days of the autumn–winter period. We trapped flying squirrels twice in 59 aspen-dominated stands in the autumn period using low- (1.5 m above ground-level) and high-mounted (4 m) traps to determine site occupancy. A total of 85 individuals were captured on 2,880 trap-nights. During the winter period, we radio-tracked 26 individuals to 87 diurnal nests in 220 locations. None of the habitat variables considered (cavity availability, woody debris, and lateral cover) explained site occupancy. Detectability decreased with precipitation, and was lower using high traps than low traps. Both females and males used tree cavities (26%), external nests (39%), and ground nests (35%). In cold weather, females preferred ground nests, whereas males preferred external nests. Our results do not support the hypothesis that tree cavities represent a limiting factor to northern flying squirrels in cold environments. Instead, this species seems to be a generalist and is opportunistic, using a variety of nest types. Nevertheless, practices ensuring the persistence of large diameter live cavity trees, providing better insulative properties, are likely to increase the relative use of tree cavities as nest sites by northern flying squirrels. © 2011 The Wildlife Society.     

Assessing aural and visual cueing as tools for seabird management

Social attraction, that is, mimicking of active and productive colonies via audio playback of calls of breeding conspecifics and the use of decoys, is commonly used to attract birds to newly established or restored breeding sites. However, little is known about the relative importance of aural versus visual cues for identify nesting areas. Such information is important for design and evaluation of management protocols. We studied the effectiveness of decoys (visual cues) and playbacks (audio cues) as methods for restoring a colony of common terns (Sterna hirundo) at Muskeget Island, Massachusetts, USA. We used a 2-year, crossover experiment with 3 treatment areas: audio and visual, audio only, and visual only. We reversed treatment areas in the second year to control for previous nesting area or substrate preference. In both years, nests were built 9–101 m downwind of loudspeakers. There was no overlap in areas used for nesting between years and no nests were built within decoy plots in either year. Behavioral observations showed that birds responded to decoys only when within range of sound treatments. Conspecific vocalizations appear to be important proximate cues for seabird colony site selection and should be given priority in management protocols using social attraction. © 2011 The Wildlife Society.     

A clan of Late Pleistocene hyenas,Crocuta crocuta spelaea (Goldfuss 1823), from the Rösenbeck Cave (Germany) and a contribution to cranial shape variability

The remains of a large population of Late Pleistocene Ice Age spotted hyenas (Crocuta crocuta spelaea Goldfuss 1823) are described from the Rösenbeck Cave in the Sauerland Karst of Germany. They include four skulls and 79 other skeletal parts, mainly from adult to senile animals, making this an important Late Pleistocene hyena cave‐den site in Europe. The skulls have been compared with 30 other hyena skull specimens from open air and cave‐den sites in central Europe (Germany, Austria, the Czech Republic and Romania) in order to achieve an understanding of sexual dimorphism in the crania of Ice Age spotted hyenas from the Upper Pleistocene cold period (Weichselian/Wuermian), and the types of injuries that they acquired during their lifetimes. Three different types of cranial shape have been distinguished, one of which appears to have been a consequence of pathologies that developed in response to injuries caused by bites received during the animal's lifetime, as a result of either intraspecies fights or fights with lions. Although cave bears penetrated to great depths within the Rösenbeck Cave for hibernation purposes, hyenas appear to have utilized only a short section of the cave that branched off directly from the entrance area. Hyena cub material is scarce, suggesting that this area was used as a communal den rather than for cub rearing. Bones exhibiting gnaw marks, representing prey imported by hyenas, are also rare but include horse (Equus caballus przewalskii) and reindeer (Rangifer tarandus) remains. The scarcity of bones from hyena prey suggests that this cave was not used as a food storage site. Some Ursus spelaeus cave bear remains, including skulls, show evidence of having been gnawed, chewed and cracked by hyenas, indicating that the hyenas periodically fed on cave bear carcasses in a specialization response to the mammoth steppe megafauna absence of the boreal mountain forest regions. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2011, 103 , 191–220.     

Factors driving spatial and temporal variation in production and production / biomass ratio of stream‐resident brown trout (Salmo trutta) in Cantabrian streams

1. The objective was to identify the factors driving spatial and temporal variation in annual production (P_A) and turnover (production/biomass) ratio (P/B_A) of resident brown trout Salmo trutta in tributaries of the Rio Esva (Cantabrian Mountains, Asturias, north‐western Spain). We examined annual production (total production of all age‐classes over a year) (P_A) and turnover (P/B_A) ratios, in relation to year‐class production (production over the entire life time of a year‐class) (P_T) and turnover (P/B_T) ratio, over 14 years at a total of 12 sites along the length of four contrasting tributaries. In addition, we explored whether the importance of recruitment and site depth for spatial and temporal variations in year‐class production (P_T), elucidated in previous studies, extends to annual production. 2. Large spatial (among sites) and temporal (among years) variation in annual production (range 1.9–40.3 g m^?2 per year) and P/B_A ratio (range 0.76–2.4 per year) typified these populations, values reported here including all the variation reported globally for salmonids streams inhabited by one or several species. 3. Despite substantial differences among streams and sites in all production attributes, when all data were pooled, annual (P_A) and year‐class production (P_T) and annual (P/B_A) and year‐class P/B_T ratios were tightly linked. Annual (P_A) and year‐class production (P_T) were similar but not identical, i.e. P_T = 0.94 P_A, whereas the P/B_T ratios were 4 + P/B_A ratios. 4. Recruitment (Rc) and mean annual density (N_A) were major density‐dependent drivers of production and their relationships were described by simple mathematical models. While year‐class production (P_T) was determined (R² = 70.1%) by recruitment (Rc), annual production (P_A) was determined (R² = 60.3%) by mean annual density (N_A). In turn, variation in recruitment explained R² = 55.2% of variation in year‐class P/B_T ratios, the latter attaining an asymptote at P/B_T = 6 at progressively higher levels of recruitment. Similarly, variations in mean annual density (N_A) explained R² = 52.1% of variation in annual P/B_A, the latter reaching an asymptote at P/B_A = 2.1. This explained why P/B_T is equal to P/B_A plus the number of year‐classes at high but not at low densities. 5. Site depth was a major determinant of spatial (among sites) variation in production attributes. All these attributes described two‐phase trajectories with site depth, reaching a maximum at sites of intermediate depth and declining at shallower and deeper sites. As a consequence, at sites where recruitment and mean annual density reached minimum or maximum values, annual (P_A) and year‐class production (P_T) and annual (P/B_A) and year‐class P/B_T ratios also reached minimum and maximum values.     

基于RNA-Seq数据识别果蝇剪接位点和可变剪接事件

完整基因结构的预测是当前生命科学研究的一个重要基础课题,其中一个关键环节是剪接位点和各种可变剪接事件的精确识别.基于转录组测序（RNA-seq）数据,识别剪接位点和可变剪接事件是近几年随着新一代测序技术发展起来的新技术策略和方法.本工作基于黑腹果蝇睾丸RNA-seq数据,使用TopHat软件成功识别出39718个果蝇剪接位点,其中有10584个新剪接位点.同时,基于剪接位点的不同组合,针对各类型可变剪接特征开发出计算识别算法,成功识别了8477个可变剪接事件（其中新识别的可变剪接事件3922个）,包括可变供体位点、可变受体位点、内含子保留和外显子缺失4种类型.RT-PCR实验验证了2个果蝇基因上新识别的可变剪接事件,发现了全新的剪接异构体.进一步表明,RNA-seq数据可有效应用于识别剪接位点和可变剪接事件,为深入揭示剪接机制及可变剪接生物学功能提供新思路和新手段.     

姜寨遗址先民食谱分析

尽管通过C、N稳定同位素分析已对陕西临潼姜寨遗址先民的食物结构和粟作农业进行了初步探索,但研究中的一些重要问题,如不同时期先民食物结构的演变,姜寨与半坡、史家先民食物结构间的差异等,依然未能深入讨论。为此,本文对姜寨遗址出土的不同时期(一期、二期)人骨进行了C、N稳定同位素分析,试图揭示先民食物结构的演变历程,探索姜寨与半坡、史家先民食物结构间的差异,并初步探讨产生这种差异的可能原因。人骨的δ13C平均值(-9.7±1.0‰)和δ15 N平均值(8.5±0.5‰),表明粟类食物(包括粟类作物以及依赖于粟类作物的动物等)在姜寨先民食谱中占据主要地位,且动物资源在食物中的比例相对较低。两期先民的δ13C和δ15N值,无显著性差异,表明先民一直从事粟作农业以及家畜的饲养活动。食谱分析并未发现第二期先民食用更多野生动物的证据,这可能与先民样品量相对偏少、二期先民食用的野生动物比例上升较小、动物类食物在先民食谱中所占比例较小等原因有关。对比地理位置毗邻、文化年代相近的姜寨、史家、半坡遗址先民δ13C值,姜寨(-9.7±1.0‰,N=19)与史家(-10.0±0.7‰,N=9)接近,而远高于半坡(-14.8±1.9‰,N=5),表明半坡遗址粟作农业的种植规模要逊于姜寨和史家遗址。我们认为,不同遗址间先民δ13C值的差异,可能受半坡样品量偏少、遗址间小生态环境不同等因素的影响。     

Evidence for the transmission of information through electric potentials in injured avocado trees

Electrical excitability and signaling, frequently associated with rapid responses to environmental stimuli, have been documented in both animals and higher plants. The presence of electrical potentials (EPs), such as action potentials (APs) and variation potentials (VPs), in plant cells suggests that plants make use of ion channels to transmit information over long distances. The reason why plants have developed pathways for electrical signal transmission is most probably the necessity to respond rapidly, for example, to environmental stress factors.We examined the nature and specific characteristics of the electrical response to wounding in the woody plant Persea americana (avocado). Under field conditions, wounds can be the result of insect activity, strong winds or handling injury during fruit harvest. Evidence for extracellular EP signaling in avocado trees after mechanical injury was expressed in the form of variation potentials. For tipping and pruning, signal velocities of 8.7 and 20.9 cm/s, respectively, were calculated, based on data measured with Ag/AgCl microelectrodes inserted at different positions of the trunk. EP signal intensity decreased with increasing distance between the tipping and pruning point and the electrode. Recovery time to pre-tipping or pre-pruning EP values was also affected by the distance and signal intensity from the tipping or pruning point to the specific electrode position. Real time detection of remote EP signaling can provide an efficient tool for the early detection of insect attacks, strong wind damage or handling injury during fruit harvest.Our results indicate that electrical signaling in avocado, resulting from microenvironment modifications, can be quantitatively related to the intensity and duration of the stimuli, as well as to the distance between the stimuli site and the location of EP detection. These results may be indicative of the existence of a specific kind of proto-nervous system in plants.     

Procedural Steps in Human Risk Assessment for Contaminated Sites: An Italian Case-Study Application with the ARA-CoSSSLs Approach

Within the increased attention to the absolute risk assessment for potentially contaminated sites at the Italian level, the definable ARA-CoS_SSLs modeling approach for human health protection was recently derived with predominant reference to the USEPA SSLs procedure. The basic aim of the ARA-CoS_SSLs applications regards the possible technical-scientific improvement and better understanding of significant aspects in carrying out the human risk assessment at a given site. Particularly, the final reliability of the human risk assessment depends on the scientific plausibility of the procedural steps implemented during the elaboration of the available site investigation and information data. In this perspective, this article deals with the procedural elaboration steps conceived and implemented for the ARA-CoS_SSLs case-study application at a potentially contaminated subarea of a major Italian priority industrial site. Specific indications and aspects are addressed in the paper on the following procedural steps: (1) the usefulness of selection criteria for contaminants of concern; (2) the consideration of the possible soil gas loss (during drilling and/or sampling and/or analytical operations) for a reliable definition of subsurface representative concentrations for organic contaminants; (3) the geostatistical definition of the site areal extent, with a proposed conservative scenario in case of sparse spatial concentration data.